Healthy Spaghetti Squash Au Gratin
If you’re looking for a dish that’s both comforting and healthy, you’ve come to the right place! This Healthy Spaghetti Squash Au Gratin is a delightful blend of flavors and textures that will make your taste buds dance. It’s creamy, cheesy, and surprisingly light, making it perfect for any occasion—whether you’re whipping up a quick weeknight dinner or impressing family and friends at a gathering.
What I love most about this recipe is how it transforms humble spaghetti squash into a show-stopping dish. You’ll find that the roasted squash mingles beautifully with sautéed onions, garlic, and tangy Greek yogurt, all topped with melted cheddar cheese. It’s an easy way to enjoy wholesome ingredients while still feeling indulgent!
Why You’ll Love This Recipe
- Easy to make: This recipe comes together quickly, making it perfect for busy evenings when you want something delicious without spending hours in the kitchen.
- Family-friendly: Even picky eaters will be asking for seconds! The cheesy goodness makes it appealing to everyone at the table.
- Make-ahead option: Prepare the dish in advance and pop it in the oven before serving. It’s great for meal prep or holiday feasts.
- Packed with veggies: With spaghetti squash as the star ingredient, you’re getting a healthy dose of vegetables without sacrificing flavor.

Ingredients You’ll Need
Let’s gather some simple, wholesome ingredients to create this delightful dish. You might already have most of these in your pantry!
For the Casserole
- 1 medium spaghetti squash
- 1 tbsp olive oil
- ½ cup diced onion
- 2 cloves garlic (minced)
- ½ cup plain Greek yogurt (or sour cream)
- 1½ cups shredded sharp cheddar cheese (divided)
- ¼ tsp salt
- ¼ tsp black pepper
- Optional: ¼ tsp paprika or dried thyme
Variations
This Healthy Spaghetti Squash Au Gratin is wonderfully flexible! Here are some fun ideas to customize it:
- Add more veggies: Toss in some spinach, mushrooms, or bell peppers for extra nutrition and flavor.
- Change up the cheese: Swap out sharp cheddar for mozzarella or pepper jack if you like a little kick.
- Make it spicy: Add a pinch of red pepper flakes for warmth or top it with fresh herbs like parsley or basil before serving.
- Go dairy-free: Use cashew cream instead of Greek yogurt and choose your favorite dairy-free cheese.
How to Make Healthy Spaghetti Squash Au Gratin
Step 1: Roast the Spaghetti Squash
Preheat your oven to 400°F (205°C). Start by slicing the spaghetti squash in half lengthwise and scooping out the seeds. Roasting brings out its natural sweetness and makes it tender. Brush the cut sides with olive oil before placing them face-down on a baking sheet. Roast for about 35–40 minutes until you can easily pierce it with a fork.
Step 2: Sauté Onions and Garlic
While your squash is roasting, let’s get those onions cooking! Heat a skillet over medium heat and sauté the diced onions in a bit of olive oil until they become soft—about 5 minutes will do. Adding minced garlic at this stage gives off such an inviting aroma; cook just until fragrant (about another minute) before taking them off the heat. This step enhances their sweetness and adds depth to our casserole.
Step 3: Shred the Squash
Once your roasted squash has cooled enough to handle, grab a fork and shred it into noodle-like strands. This is where the magic happens! The texture mimics traditional pasta but keeps things light and healthy.
Step 4: Combine Ingredients
In a large mixing bowl, combine your shredded squash with sautéed onions, garlic, Greek yogurt (or sour cream), one cup of shredded cheese, salt, pepper, and any optional spices like paprika or thyme. Mix well; every bite should be full of flavor!
Step 5: Bake It Up!
Transfer your mixture into a greased casserole dish and sprinkle the remaining half cup of cheese on top. Bake at 375°F for about 20–25 minutes until everything is hot and bubbly with a lovely golden top.
Step 6: Serve & Enjoy!
Let your Healthy Spaghetti Squash Au Gratin cool slightly before serving. Scoop out portions as a side dish or enjoy it as a light main course—either way, it’s sure to impress!
Pro Tips for Making Healthy Spaghetti Squash Au Gratin
Creating the perfect Healthy Spaghetti Squash Au Gratin is a delightful experience, and with these handy tips, you’ll ensure it turns out just right!
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Choose the right squash: Selecting a firm, unblemished spaghetti squash will yield the best texture and flavor. A ripe squash has a slightly dull skin and feels heavy for its size.
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Roast until golden: When roasting your spaghetti squash, let it get a bit caramelized. This enhances the natural sweetness of the squash and adds depth to your dish.
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Experiment with cheeses: While sharp cheddar is delicious, feel free to mix in other cheeses like mozzarella or pepper jack for added creaminess and flavor complexity.
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Customize with veggies: Don’t hesitate to add in some extra veggies! Spinach, bell peppers, or even mushrooms can complement the flavors beautifully and increase the nutritional value.
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Rest before serving: Allow your au gratin to sit for about 5 minutes after baking. This helps it set up nicely and makes serving easier while enhancing the flavors.
How to Serve Healthy Spaghetti Squash Au Gratin
This dish not only tastes fabulous but also looks stunning on your table. Here are some ideas on how to present this comforting meal!
Garnishes
- Chopped fresh herbs: Sprinkle some chopped parsley or chives over the top just before serving for a pop of color and freshness.
- Crushed red pepper flakes: For a hint of heat, add a pinch of crushed red pepper flakes to elevate your dish’s flavor profile.
Side Dishes
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Simple Green Salad: A refreshing green salad with mixed greens, cherry tomatoes, and a light vinaigrette complements the richness of the au gratin perfectly.
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Garlic Roasted Broccoli: Toss broccoli florets in olive oil, garlic, salt, and pepper, then roast until tender. This side adds a nutritious crunch that balances well with the creamy gratin.
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Quinoa Pilaf: Fluffy quinoa cooked with vegetable broth and mixed with seasonal vegetables offers a nutty flavor that pairs wonderfully with this cheesy dish.
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Herbed Couscous: Light and fluffy couscous tossed with fresh herbs makes for an easy addition that rounds out your meal beautifully.
Enjoy making this Healthy Spaghetti Squash Au Gratin part of your culinary repertoire! It’s sure to become a favorite among family and friends alike.

Make Ahead and Storage
This Healthy Spaghetti Squash Au Gratin is a fantastic recipe for meal prep, allowing you to enjoy delicious, wholesome comfort food throughout the week. Here’s how to store and reheat your leftovers effectively.
Storing Leftovers
- Store any leftover spaghetti squash au gratin in an airtight container in the refrigerator.
- It will stay fresh for up to 3–5 days.
- Make sure to let it cool completely before sealing the container to prevent condensation.
Freezing
- To freeze, portion out the dish into freezer-safe containers or bags.
- Label with the date and name of the dish for easy identification.
- It can be frozen for up to 2-3 months. Thaw in the refrigerator before reheating.
Reheating
- For best results, reheat leftovers in the oven at 350°F (175°C) until warmed through (about 15-20 minutes).
- Alternatively, use a microwave. Heat in short bursts, stirring in between, until hot.
- If baked from frozen, increase your cooking time by 10-15 minutes.
FAQs
Here are some frequently asked questions about this delightful dish.
Can I make Healthy Spaghetti Squash Au Gratin ahead of time?
Absolutely! You can prepare the entire dish ahead of time and store it in the fridge until you’re ready to bake it. Just add a few extra minutes to the baking time if it’s cold from the refrigerator.
What can I substitute for Greek yogurt in Healthy Spaghetti Squash Au Gratin?
If you prefer not to use Greek yogurt, you can substitute it with non-dairy yogurt or silken tofu blended until smooth. This will maintain that creamy texture without compromising flavor.
Is Healthy Spaghetti Squash Au Gratin gluten-free?
Yes! This recipe is naturally gluten-free as it uses spaghetti squash instead of traditional pasta, making it a perfect option for those avoiding gluten.
Can I add more vegetables to Healthy Spaghetti Squash Au Gratin?
Definitely! Feel free to mix in other vegetables like spinach, kale, or bell peppers for added nutrition and flavor. Just sauté them lightly before mixing them into the dish.
How do I know when my Healthy Spaghetti Squash Au Gratin is done baking?
Your au gratin will be done when it’s bubbling on the edges and has a golden-brown top. A fork should easily pierce through the layers when testing for doneness.
Final Thoughts
I hope this Healthy Spaghetti Squash Au Gratin finds a special place in your kitchen! It’s not just a dish; it’s a warm hug on a plate that’s both nutritious and satisfying. Whether you whip it up for family dinners or serve it at gatherings, I’m confident you’ll love every cheesy bite. Enjoy making this recipe and feel free to share your experiences—I’d love to hear how it turns out!
Healthy Spaghetti Squash Au Gratin
Healthy Spaghetti Squash Au Gratin is a delightful and nutritious twist on the classic gratin. This creamy, cheesy dish transforms spaghetti squash into a satisfying meal that’s perfect for any occasion. Roasted to perfection and combined with sautéed onions, garlic, and a tangy Greek yogurt base, this au gratin offers a rich flavor profile without the heaviness. Topped with melted cheddar cheese, it’s an indulgent yet healthy option that appeals to all palates. Whether you’re preparing a quick weeknight dinner or impressing guests at a gathering, this recipe is sure to be a hit. Plus, it’s packed with vegetables, making it a wholesome choice for those seeking comfort food without the guilt!
- Prep Time: 15 minutes
- Cook Time: 60 minutes
- Total Time: 1 hour 15 minutes
- Yield: Serves approximately 4 people 1x
- Category: Main
- Method: Baking
- Cuisine: American
Ingredients
- 1 medium spaghetti squash
- 1 tbsp olive oil
- ½ cup diced onion
- 2 cloves garlic (minced)
- ½ cup plain Greek yogurt
- 1½ cups shredded sharp cheddar cheese (divided)
- ¼ tsp salt
- ¼ tsp black pepper
- Optional: ¼ tsp paprika or dried thyme
Instructions
- Preheat the oven to 400°F (205°C). Slice the spaghetti squash in half lengthwise, remove the seeds, and brush with olive oil. Place face-down on a baking sheet and roast for 35–40 minutes until tender.
- In a skillet over medium heat, sauté diced onion in olive oil until soft (about 5 minutes). Add minced garlic and cook for an additional minute until fragrant.
- Once the squash is cool, shred it into noodle-like strands using a fork.
- In a large bowl, combine shredded squash with sautéed onions, garlic, Greek yogurt, one cup of cheese, salt, pepper, and any optional spices.
- Transfer to a greased casserole dish and top with remaining cheese. Bake at 375°F (190°C) for 20–25 minutes until bubbly and golden.
- Allow to cool slightly before serving.
Nutrition
- Serving Size: 1 cup (200g)
- Calories: 250
- Sugar: 3g
- Sodium: 380mg
- Fat: 14g
- Saturated Fat: 7g
- Unsaturated Fat: 6g
- Trans Fat: 0g
- Carbohydrates: 24g
- Fiber: 3g
- Protein: 12g
- Cholesterol: 30mg
